Passing windows build commands to remote windows via Jump on Mac

Hello out there!

I am a huge fan of Jump Desktop, its great, iOS app is great too.  

On to my Question: 

I am looking to develop GAMS code local on my IDE (mac) and then run a build script that sends the code to a remote windows server that would compile, run and display the GAMS software. I am using General Algebraic Modeling System (GAMS) to model my Graduate Thesis in Electrical Engineering.  I am not coding in the GAMS software because it is terrible to write in. 

It is basically the same as if a Linux developer used a Mac to write code with and IDE and then compile it using a Linux  dev VM and ssh.  (this is how I do my C++ work)

I am open to alternative solutions but to summarize below is what I am looking for.  

1. a way to both open a jumpDesktop connection and pass a command/script to that remote desktop's cmd interface.  So my local box is a Mac,  remote box is a windows that i have little control over.  

I would like to do this via a build script opposed to using DropBox because of its speed.

Thank you for the Help